## Stroklitude Data

on Monday, July 23rd, 2018 1:55 | by Anokhi Kashiparekh

This week we worked on perfecting the fly hooking. Some of the data we got is as follows (Data from just one fly).

Category: lab.brembs.net, R code, Spontaneous Behavior, strokelitude, WingStroke | No Comments

## The T-Maze experiments : Middle analysis and Correlation plot

on Saturday, July 14th, 2018 12:06 | by Naman Agrawal

The mean ratio of the flies that stay in the middle during the experiments.

Correlation plot between the mean ratio of the flies that stay in the middle versus the Weighted PIs

Slope = 0.0053

Intercept = 0.240

R square value = -0.03834

contrary to the expectations, there seems to be no correlation .

Category: lab.brembs.net, neuronal activation, operant self-learning, Optogenetics, R code | No Comments

## Running the flight simulator analysis script

on Monday, July 2nd, 2018 1:55 | by Anders Eriksson

Category: flight, Lab, Memory, R code | No Comments

## Wildtype flies and flight simulator Part 2

on Monday, June 11th, 2018 1:29 | by Anders Eriksson

Category: flight, Memory, R code, Uncategorized | No Comments

## Wildtype flies and flight simulator

on Monday, June 4th, 2018 9:18 | by Anders Eriksson

Category: flight, Memory, R code | No Comments

## EMD with ICA to one sample of torque trace

on Monday, March 19th, 2018 2:35 | by Christian Rohrsen

Trace segment from Maye et al. 2007 in the uniform arena

Trace after filtering by selecting the first 8 IMFs (intrinsic mode functions) from EMD (empirical mode decomposition). Since the signal should be quite clean I do not take out the first IMFs. The last IMFs, however, are too slow and change the baseline to much

Some examples of the IMFs obtained from EMD:

Since this is separating behavior adapting to the data intrinsic time scales I am now thinking of analysing with the SMAP algorithm to see if the behavior is more or less nonlinear at certain time scales.

In addition, I have thought of using ICA (Independent component analysis), that is an algorithm famous for the blind source separation problem by extracting the most independent signals from the input signals (in this case the IMFs which are different time scales of the behavior). So the ICs should consist of mixes of different time scales that are correlated together and thus belong (but not necessarily) to the same action/movement module/… Here a few ICs (from 10). My idea is that muscles might coordinate independently between ICs but coordinated within ICs. However to prove that is not that easy I guess

Category: flight, R code, Spontaneous Behavior | No Comments

## SMAP results

on Monday, October 9th, 2017 2:34 | by Christian Rohrsen

These are the results of the SMAP for the TNTxWTB. I also have done a few for the c105;;c232xWTB but there is not much to say. I would say that the cleanest lines show a bigger slope, but prone to subjectiveness.

In addition, I have done some animations of the attractors that I have posted on slack because of size.

Category: flight, genetics, R code, Spontaneous Behavior, strokelitude, WingStroke | No Comments

## Droso Kurs and more

on Friday, April 22nd, 2016 6:18 | by Christian Rohrsen

Here I attach the results in a pdf file from the students praktikum with an additional line I tested on my own meanwhile (Gr28bd and TrpA1 drivers together). They seem to work as a really good positive control btw, good for technique optimization.

For the students I tried out two different split drivers, the MB058B, which targets PPL1-a’2a2, and MB301B, which targets PAM-b2b’2. In addition the Gr5a driver, because it targets the “sugar” neurons. From the split drivers I wanted to see if I still get a validation from my initial model. MB301B seems to do quite what my model would predict but MB058B maybe not. Hopefully in a future screen I would be able to test many more and make a much more precise modelling.

Category: neuronal activation, Optogenetics, R code | No Comments

## Cumulative bins, starting at zero and normalizing

on Monday, April 4th, 2016 3:04 | by Christian Rohrsen

In the last meeting Björn proposed to do correlations of cumulative increasing bins. He said to do that taking the zeroth point (last library point where prediction is still not done) and use it for having a potential 1 of correlation coefficient at the beginning. I could not do that because I didnt save the zeroth points, and this will be a bit tedious and confusing considering that many flies were tested and probably the order is not 100% known. Thus, I just did the bins skipping this zeroth point. After all, we should see something similar with this one. First two graphs: c105;;c232>TNT (first and second prediction point), second: WTBxTNT, third: WTBxc105;;c232.

Examples of how each of the flies look like. So they are basically cumulative bins with each single fly (each in different colour). Just to have a hint how does the singularity looks like. Second thing I did is normalize the to have a range from -1 to 1 all of them (I have to double check the range in the script) and also setting them at a starting point of zero. I did this because we do not want to have differences in the correlation coefficient due to a different offset of the values of the wing beat and neither because of the starting point (if the fly was already flying to the right full gas, then it could be that it has an influence in the following prediction).

c105;;c232 –> first at starting at zero without normalizing and then with normalizing. The next is just the RMSE (not so important).

Category: R code, Spontaneous Behavior, strokelitude, WingStroke | No Comments

## Prediction with binnning

on Monday, March 21st, 2016 1:13 | by Christian Rohrsen

To see if there is an exponential decay in the prediction of the fly traces we did correlations of bins of 40 data points. We have 4 graphs (the last one merged) which consist of predictions at two different points with two different number of neighbours used for the prediction. So we have for each group sucesively: prediction at the first prediction point with the first number of neigbours, then the same with different number of neighbours. The last two are two different numbers of neighbours for the second prediction point. In the order: c105;;c232>TNT, TNTxWTB, c105;;c232xWTB

Category: R code, Spontaneous Behavior, strokelitude, WingStroke | No Comments